2013
JOURNAL ARTICLES
Akhunov E, Sehgal S, Liang H, Wang S, Akhunova A, Kaur G, Li W, Forrest KL, See D, Simkova H, Ma Y, Hayden M, Luo M-C, Farris J, Dolezel J, and Gill BS. 2013. Comparative analysis of orthologous genes in grass genomes reveals the accelerated rates of alternative splicing and coding sequence evolution in polyploid wheat. Plant Physiol 161:252-265 [PDF].
Dawson, J. C., Endelman, J.B., Helot, N., Crossa, J., Poland, J., Dreisigacker, S., Manès, Y., Sorrells, M.E., & Jeannine, J.-L. (2013) The use of unbalanced historical data for genomic selection in an international wheat breeding program. Field Crops Research DOI: 10.1016/j.fcr.2013.07.020
Gill BS. 2013. SNPing Aegilops tauschii genetic diversity and the birthplace of bread wheat. New Phytologist 198:641-642.
Heslot, N., Rutkoski, J., Poland, J., Jannik, J.-L., & Sorrells, M.E. (2013) Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity. PLoS ONE 8(9): e74612.
Lado, B., Matus, I., Rodriquez, A., Inostroza, L., Poland, J., Belize, F., Pozo, A.D., Quince, M., & Zitzewitz, J.V. (2013) Increased genomic prediction accuracy through spatial adjustment of field trial data. G3 3:12, 2105-2114 DOI: 10.1534/g3.113.007807
Liu S, Sehgal SK, Li J, Lin M, Trick HN, Yu, J, Gill BS, and Bai G. 2013. Cloning and characterization of a critical regulator for pre-harvest sprouting in wheat. Genetics 195:263-273.
Liu W, Danilova TV, Rouse MN, Bowden RL, Friebe B, Gill BS, Pumphrey MO. 2013. Development and characterization of a compensating wheat–Thinopyrum intermedium Robertsonian translocation with Sr44 resistance to stem rust (Ug99). Theor Appl Genet 126(5):1167-1177.
Liu XM, Khajuria C, Li J, Trick HN, Huang L, Gill BS, Reeck GR, Antony G, White FF, and Chen MS. 2013. Wheat Mds-1 encodes a heat-shock protein and governs susceptibility towards the Hessian fly gall midge. Nature Commun 4:2070 DOI: 10.1038/ncomms3070.
Luo M-C, Gub YQ, You FM, Deal KR, Ma Y, Hua Y, Huo N, Wang Y, Wanga J, Chena S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KFX, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, and Dvorak J. 2013. A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc Natl Acad Sci USA 110 (19) 7940-7945.
Mascher, M., Muehlbauer, G.J., Rokhsar, D.S., Chapman, J., Schmutz, J., Barry, K., Muñoz-Amatriaín, M., Close, T.J., Wise, R.P., Schulman, A.H., Himmelhoch, A., Mayer, K.F.X., Scholz, U., Poland, J.A., Stein, N.A., & Waugh, R. (2013) Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). The Plant Journal DOI: 10.1111/tpj.12319
Mascher, M., Wu, S., St Amand, P., Stein, N., & Poland, J. (2013) Application of genotyping-by-sequencing on semiconductor sequencing platforms: A comparison of genetic and reference-based marker ordering in barley. PLoS ONE 8(10): e76925. DOI: 10.1371/journal.pone.0076925
Olson EL, Rouse MN, Pumphrey MO, Bowden RL, Gill BS, and Poland JA. 2013. Simultaneous transfer, introgression, and genomic localization of genes for resistance to stem rust race TTKSK (Ug99) from Aegilops tauschii to wheat. Theor Appl Genet 126(5):1179-88.
Olson EL, Rouse MN, Pumphrey MO, Bowden RL, Gill BS, and Poland JA. 2013. Introgression of stem rust resistance genes SrTA10187 and SrTA10171 from Aegilops tauschii to wheat. Theor Appl Genet 126(10):2477-2484.
Qi LL, Wu JJ, Friebe B, Qian C, Gu YQ, Fu DL, and Gill BS. 2013. Sequence organization and evolutionary dynamics of Brachypodium-specific centromere retrotransposons. Chromosome Res 21:507-521.
Raupp WJ and Friebe B. 2013. Bikram S. Gill, Cytogeneticist and Wheat Man. Plant Breeding Rev 37:1-34.
Rutkoski, J.E., Poland, J., Jannink, J.-L., &Sorrells, M.E. (2013) Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy. G3: Genes Genomes Genetics 3(3): 427-439.
Sehgal B, Subramanyam B, Arthur FH, and Gill BS. 2013. Variation in susceptibility of field strains of three stored grain insect species to spinosad and chlorpyrifos-methyl plus deltamethrin on hard red winter wheat. J Econ Entomol 106(4):1911-1919.
Sehgal B, Subramanyam B, Arthur FH, and Gill BS. 2013. Variation in susceptibility of laboratory and field strains of three stored-grain insect species to β-cyfluthrin and chlorpyrifos-methyl plus deltamethrin applied to concrete surfaces. Pest Manag Sci 70(4):576-587.
Yang Z, Shen Z, Tetreault H, Johnson L, Friebe B, Frazier T, Huang L-K, Burklew C, Zhang X-Q, and Zhao B. 2013. Production of autopolyploid lowland switchgrass lines through in vitro chromosome doubling. Bioenergy Res 7(1):232-242.
OTHER PUBLICATIONS
Gill BS, Raupp WJ, and Friebe B. 2013. Genomic perspective on the dual threats of imperiled native agro-ecosystems and climate change to world food security. In: Combating Climate Change: An Agricultural Perspective(Chapter 9) (Kang MS and Banga SS, Eds) CRC Press, Boca Raton, FL. pp. 163-170.
Qi L, Friebe B, and Gill BS. 2013. Centromere synteny among Brachypodium, wheat, and rice. In: Plant Centromere Biology (Jiang J and Birchler JA, Eds). John Wiley & Sons, Inc, Ames, IO. pp. 57-66.
Raupp WJ ed. 2013. Annual Wheat Newsletter, volume 59. 183 pp.
HTML versions of all issues of the Annual Wheat Newsletters posted at http://wheat.pw.usda.gov/wheatnewsletter
MEETING ABSTRACTS
Plant & Animal Genome XXI Abstracts (12-16 January, 2013, San Diego, CA) are at http://www.intlpag.org/.
Danilova TV, Friebe B, and Gill BS. 2013. Development of single-copy gene FISH for wheat and its application in studying chromosomal rearrangements in wild relatives and mapping of the wheat genome. [Abstract P0913]
Dvorak J, Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J-R, Chen S, Jorgensen C, Zhang Y, McGuire P, Pasternak S, Stein J, Ware D, Kramer M, McCombie WR, Kianian S, Martis MM, Mayer K, Sehgal SK, Gill BS, Bevan M, Doležel J, Lazo GR, Anderson O, Massa AN, Rabinowicz PD, and Devos KM. 2013. A 4-gigabase comparative physical map of Aegilops tauschii, the wheat D-genome progenitor, opens the window into the evolution of gene content and meaning of genome size in grasses. [Abstract W197]
Olson E, Rouse M, Pumphrey M, Bowden RL, Gill BS, and Poland J. 2013. Integrated genetic mapping and transfer of genes for Ug99 wheat stem rust resistance from the D genome of Aegilops tauschii to bread wheat, Triticum aestivum. [Abstract P0256]
Tiwari VK, Sehgal SK, Friebe B, Kalia B, Doležel J, Simkova H, and Gill BS. 2013. Alien chromosome-specific SNP discovery for monitoring alien chromosome introgression in wheat. [Abstract P0272]
