2012
Becklin, K., Hertweck, K., and Jumpponen, A. 2012. Host identity impacts rhizosphere fungal communities associated with three alpine plant species. Microbial Ecology 63: 682-693.
Electronic Copy - 2012 Microbial Ecol.pdf
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., Strömmer, R. 2012. Twenty years of research on Lyman Glacier forefront – lessons learned and questions yet unanswered. Fungal Ecology In Press.
Mandyam, K., Fox, C., and Jumpponen, A. 2012. Septate endophyte colonization and host responses of grasses and forbs native to a tallgrass prairie. Mycorrhiza 22: 109-119.
Electronic Copy - 2012 Mycorrhiza.pdf
2011
Hui, N., Jumpponen, A., Niskanen, T., Liimatainen, K., Koivula, T., Jones, K., Romantschuk, M., Strömmer, R. 2011. EcM fungal community structure, but not diversity, altered in Pb contaminated shooting range in a boreal coniferous forest site in Southern Finland. FEMS Microbiology Ecology 76: 121-132.
Electronic Copy - 2011 FEMS.pdf
Jumpponen, A. 2011. Analysis of ribosomal RNA indicates seasonal community dynamics in Andropogon gerardii roots. Mycorrhiza 21: 453–464.
Electronic Copy - 2011 Mycorrhiza.pdf
Unterseher, M., Dorman, C.F., Jumpponen, A., Moora, M., Öpik, M., Tedersoo., L. and Schnittler, M. 2011. Species abundance distributions in fungal metagenomics – lessons learned from community ecology. Molecular Ecology 20: 275-285. 10.1111/j.1365-294X.2010.04948.x
Electronic Copy - 2011 MolEcol.pdf
Walker, J.F., Aldrich-Wolfe, L., Riffel, A., Barbare, H., Simpson, N.B., Trowbridge, J., Jumpponen, A. 2011. Diverse Helotiales associated with the roots of three species of Arctic Ericaceae provide no evidence for host specificity. New Phytologist 191: 515–527.
Electronic Copy - 2011 New Phytologist.pdf
2010
Hector, A., Y. Hautier, P. Saner, L. Wacker, R. Bagchi, J. Joshi, M. Scherer-Lorenzen, B. Schmid, E. M. Spehn, E. Bazeley-White, M. Weilenmann, M. C. Caldeira, P. G. Dimitrakopoulos, J. Finn, K. Huss-Danell, A. Jumpponen, C. P. H. Mulder, C. Palmborg, J. S. Pereira, D. Siamantziouras, A. C. Terry, A. Y. Troumbis, B. Schmid, M. Loreau. 2010. General stabilizing effects of plant diversity on grassland productivity through population asynchrony and overyielding. Ecology 91: 2213-2220.
Electronic Copy - 2010 Ecology.pdf
Garrett, K.A., Jumpponen, A., and Gomez, L. 2010. Emerging plant diseases: What are our best strategies for management? In: Controversies in Science and Technology. Vol 3. Food safety. Ed. Kleinman, D.L., Cloud-Hansen, K., Matta, C., Handelsman, J. Mary Ann Liebert Inc. Publishers. p. 152-160.
Electronic Copy - 2010 CST.pdf
Jumpponen, A., Keating, K. Gadbury, G.L., Jones, K.L. and Mattox, J.D. 2010. Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage. Plant Signaling and Behavior 5: 1157-1161
Electronic Copy - 2010PSB.pdf
Jumpponen, A. and Jones, K.L. 2010. Seasonally dynamic fungal communities in Quercus macrocarpa phyllosphere differ among urban and rural environments. New Phytologist 186: 496-513
Electronic Copy - 2010 New Phytologist.pdf
Jumpponen, A. Jones, K.L. and Blair, J. 2010. Vertical distribution of fungal communities in tallgrass prairie soil. Mycologia 102: 1027-1041.
Electronic Copy - 2010 Mycologia I.pdf
Jumpponen, A., Jones, K.L., Mattox, J.D. and Yeage, C. 2010. Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Molecular Ecology 19 (Suppl. 1): 41-53.
Electronic Copy - 2010 MolEcol.pdf
Mandyam, K. Loughlin, T., and Jumpponen A. 2010. Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairie. Mycologia 102: 813-821.
Electronic Copy - 2010 Mycologia II.pdf
Nilsson, R.H., Veldre, V., Hartmann, M., Unterseher, M., Amend, A., Bergsten, J., Kristiansson, E., Ryberg, M., Jumpponen, A., Abarenkov, K. 2010. An open source software package for rapid, automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology. Fungal Ecology, 3: 284-287. DOI: 10.1016/j.funeco.2010.05.002
Electronic Copy - 2010 FunEcol.pdf
Walker, J.F., Johnson, L.C., Simpson, N.B., Bill, M. and Jumpponen, A. 2010. Application of fungistatics in soil reduces N uptake by an arctic ericoid shrub (Vaccinium vitis-idaea). Mycologia 102: 822-834.
Electronic Copy - 2010 Mycologia III.pdf
2009
Carlsson, G., Palmborg, C., Jumpponen, A., Scherer-Lorenzen, M., Högberg, P. and Huss-Danell, K. 2009. N2 fixation in three perennial Trifolium species in experimental grasslands of varied plant species richness and composition. Plant Ecology 205: 87-104. DOI 10.1007/s11258-009-9600-9
Electronic Copy - 2009 PlantEcol.pdf
Jumpponen, A. 2009. Analysis of rhizosphere fungal communities using rRNA and rDNA. In: Symbiotic Fungi, Soil Biology 18. Ed. Varma, A. and Kharkwal, A.C. Springer-Verlag, Berlin. 29-40
Electronic Copy - 2009 Varma Symbiotic Fungi.pdf
Jumpponen, A. and Jones, K.L. 2009. Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytologist 184: 438-448.
Electronic Copy - 2009 New Phytologist.pdf
2008
Bidartondo, M.I. et al. 2008. Preserving accuracy in GenBank. Science 319: 1616-1616.
Electronic Copy - 2008 Science.pdf
Kageyama, S.A., Mandyam, K.G. and Jumpponen, A. 2008. Diversity, function and potential applications of the root-associated endophytes. In: Mycorrhiza – State of the art, genetics and molecular biology, eco-function, biotechnology, ecophysiology, structure and systemetics. Ed. Varma, A. Springer-Verlag, Berlin. p. 29-59.
Electronic Copy - 2008 Varma Mycorrhiza.pdf
Mandyam, K. and Jumpponen, A. 2008. Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment. Mycorrhiza 18: 145-155.
Electronic Copy - 2008 Mycorrhiza.pdf
2007
Hector, A., J. Joshi, M. Scherer-Lorenzen, B. Schmid, E. M. Spehn, L. Wacker, M. Weilenmann, E. Bazeley-White, C. Beierkuhnlein, M. C. Caldeira, P. G. Dimitrakopoulos, J. Finn, H. Freitas, K. Huss-Danell, A. Jumpponen, P. W. Leadley, M. Loreau, C. P. H. Mulder, C. Nesshöfer, C. Palmborg, D. J. Read, D. Siamantziouras, A. C. Terry, A. Y. Troumbis. 2007. Biodiversity and ecosystem functioning: reconciling the results of experimental and observational studies. Functional Ecology 21: 998-1002.
Electronic Copy - 2007 FuncEcol.pdf
Jumpponen, A. 2007. Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data. Microbial Ecology 53: 233-246.
Electronic Copy - 2007 MicEcol.pdf
2006
Gentili, F. and Jumpponen, A. 2006. Potential and possible uses of bacterial and fungal biofertilizers. In Handbook of Microbial Biofertilizers. Ed. Rai, M.K. and Basra, A. Haworth, New York. Pp. 1-28.
Electronic Copy - 2006 Handbook.pdf
2005
Cazarés, E. Trappe, J.M. and Jumpponen, A. 2005. Mycorrhiza–plant colonization patterns on a subalpine glacier forefront as a model system of primary succession. Mycorrhiza 15: 405-416.
Electronic Copy - 2005Mycorrhiza.pdf
Hector, A., E. M. Spehn, J. Joshi, M. Scherer-Lorenzen, B. Schmid, E. Bazeley-White, C. Beierkuhnlein, M. C. Caldeira, M. Diemer, P. G. Dimitrakopoulos, J. Finn, H. Freitas, P. S. Giller, J. Good, R. Harris, P. Högberg, K. Huss-Danell, A. Jumpponen, C. Körner, P. W. Leadley, M. Loreau, A. Minns, C. P. H. Mulder, G. O'Donovan, S. J. Otway, J. S. Pereira, A. Prinz, D. J. Read, E.-D. Schulze, A.-S. D. Siamantziouras, A. C. Terry, A. Y. Troumbis, F. I. Woodward, S. Yachi, and J. H. Lawton. 2005. Ecosystem effects of the manipulation of plant diversity in European grasslands: data from the BIODEPTH project. Ecological Archives M075-001-S1.
Hobbie, E., Jumpponen, A., Trappe, J.M. 2005. Foliar and fungal 15N:14N ratios reflect development of mycorrhizae and nitrogen supply during primary succession: testing analytical models. Oecologia, 146: 258-268.
Electronic Copy - 2005 Oecologia.pdf
Jumpponen, A. and Egerton-Warburton, L.M. 2005. Mycorrhizal fungi in successional environments – a community assembly model incorporating host plant, environmental and biotic filters. In: The Fungal Community, ed. Dighton, J. White, J.F. and Oudemans, P. CRC Press, New York. 139-180.
Electronic Copy - 2005 Fungal Community.pdf
Jumpponen, A. and Johnson, L.C. 2005. Can rDNA analyses of diverse fungal communities in soil and roots detect effects of environmental manipulations – a case study from tallgrass prairie. Mycologia 97: 1177-1194.
Electronic Copy - 2005 Mycologia.pdf
Jumpponen, A., Mulder, C.H.P., Huss-Danell, K., and Högberg, P. 2005 Winners and losers in herbaceous plant communities: insights from foliar carbon isotope composition in monocultures and mixtures. Journal of Ecology 93:1136-1147.
Electronic Copy - 2005 JEcol.pdf
Jumpponen, A., Trowbridge, J., Mandyam, K.G. and Johnson, L.C. 2005. Nitrogen enrichment causes minimal changes in arbuscular mycorrhizal colonization but shifts community composition – evidence from rDNA data. Biology and Fertility of Soils, 41: 217-224.
Electronic Copy - 2005 BFS.pdf
Mandyam, K. and Jumpponen, A. 2005. Abundance and possible functions of the root-colonising dark septate endophytic fungi. In: The Missing Lineages: Phylogeny and ecology of endophytic and other enigmatic root-associated fungi, ed. Summerbell, R. Currah, R.S. and Sigler, L. Studies in Mycology 53: 173-189.
Electronic Copy - 2005 Studies in Mycology.pdf
Palmborg, C., Scherer-Lorenzen, M., Jumpponen, A., Carlsson, G. Huss-Danell, K. and Högberg, P.2005. Inorganic soil nitrogen under grassland plant communities of different species composition and diversity. Oikos 110: 271-282.
Electronic Copy - 2005 Oikos.pdf
Spehn, E. M.,A. Hector, J. Joshi, M. Scherer-Lorenzen, B. Schmid, E. Bazeley-White, C. Beierkuhnlein, M. C. Caldeira, M. Diemer, P. G. Dimitrakopoulos, J.A. Finn, H. Freitas, P. S. Giller, J. Good, R. Harris, P. Högberg, K. Huss-Danell, A. Jumpponen, J. Koricheva, P. W. Leadley, M. Loreau, A. Minns, C. P. H. Mulder, G. O'Donovan, S. J. Otway, C. Palmborg, J. S. Pereira, A. B. Pfisterer, A. Prinz, D. J. Read, E-D. Schulze, A-S. D. Siamantziouras, A. C. Terry, A. Y. Troumbis, F. I. Woodward, S. Yachi, J. H. Lawton. 2005. Ecosystem effects of biodiversity manipulations in European grasslands. Ecological Monographs, 75: 37-63.
Electronic Copy - 2005 EcolMono.pdf
Trappe, J.M., Claridge, A.W., Jumpponen, A. 2005. Fire, hypogeous fungi and mycophagous marsupials. Mycological research 109: 516-518.
Electronic Copy - 2005 MycRes.pdf
2004
Jumpponen, A., Claridge, A.W., Trappe, J.M., Lebel, T., Claridge, D.L. 2004. Ecological relationships among hypogeous fungi and trees: inferences from association analysis integrated with habitat modeling. Mycologia 96: 510-525.
Electronic Copy - 2004 Mycologia.pdf
Söderberg, K. Probanza, Jumpponen, A. Bååth, E. 2004. The microbial community in the rhizosphere determined by community-level physiological profiles (CLPP) and direct soil- and cfu-PLFA techniques. Applied Soil Ecology 25: 135-145.
Electronic Copy - 2004 AppliedSoilEcol.pdf
Tarvainen, O., Markkola, A.M., Ahonen-Jonnarth, U., Jumpponen, A. and Strömmer, R. 2004. Changes in ectomycorrhizal colonization and root peroxidase activity in Pinus sylvestris nursery seedlings planted in forest humus. Scandinavian Journal of Forest Research 19: 400-408.
Trowbridge, J. and Jumpponen, A. 2004. Fungal colonization of shrub willow roots at the forefront of a receding glacier. Mycorrhiza 14: 283-293.
Electronic Copy - 2004 Mycorrhiza.pdf
2003
Jumpponen, A. 2003. Soil fungal community assembly in a primary successional glacier forefront ecosystem as inferred from analyses of rDNA sequences. New Phytologist 158: 569-578.
Electronic Copy - 2003 New Phytologist.pdf
Jumpponen, A., Neises, D.L. and Newsham, K.K. 2003. Direct PCR and cloning characterization of ascomycetes inhabiting the rhizoid environment of the liverwort Cephaloziella varians in Antarctica. Mycologia 95(3): 457–466.
Electronic Copy - 2003 Mycologia.pdf
2002
Jumpponen, A., Mulder, C.P.H., Högberg, P., and Huss-Danell, K. 2002. Interspecific and spatial differences in N uptake in monocultures and two-species mixtures in north European grasslands. Functional Ecology 16: 454-461.
Electronic Copy - 2002 FuncEcol.pdf
Jumpponen, A., Trappe, J.M. and Cázares, E. 2002. Occurrence of ectomycorrhizal fungi on the forefront of retreating Lyman Glacier (Washington, U.S.A.) in relation to time since deglaciation. Mycorrhiza 12: 43-49.
Electronic Copy - 2002 Mycorrhiza.pdf
Mulder, C.P.H., Jumpponen, A., Högberg, P., and Huss-Danell, K. 2002. How plant diversity and legumes affect nitrogen dynamics in experimental grassland communities. Oecologia 133: 412-421.
Electronic Copy - 2002 Oecologia.pdf
Spehn, E.M., Scherer-Lorenzen, M., Schmid, B., Hector, A., Caldeira, M.C., Dimitrikopoulus, P.G., Finn, J.A., Jumpponen, A., O'Donnovan, G., Pereira, J.S., Schulze, E.-D., Troumbis, A.Y. and Körner, C. 2002. The role of legumes as a component of biodiversity in a cross-European study of grassland biomass nitrogen. Oikos 98: 205-218.
Electronic Copy - 2002 Oikos.pdf
2001
Joshi, J., Schmid, B., Caldeira, M.C. Dimitrakopoulos, P.G., Good, J., Harris, R., Hector, A., Huss-Danell, K., Jumpponen, A., Minns, A., Mulder, C.P.H., Pereira, J.S., Prinz, A., Scherer-Lorenzen, M., Siamantziouras, A.-S.D. Terry, A.C., Troumbis, A.Y., and Lawton, J.H. 2001. Local adaptation enhances performance of common plant species. Ecology Letters 4: 536-544.
Electronic Copy - 2001 EcolLet.pdf
Jumpponen, A. 2001. Dark septate endophytes – are they mycorrhizal? Mycorrhiza 11: 207-211.
Electronic Copy - 2001 Mycorrhiza.pdf
Minns, A., Finn, J., Hector, A., Caldeira, M. Joshi, J. Palmborg, C., Schmid, B., Scherer-Lorenzen, M., Spehn, E., Troumbis, A., BIODEPTH project. 2001. The functioning of European grassland ecosystems: potential benefits of biodiversity to agriculture. Outlook on Agriculture 30: 179-185.
2000
Caldwell, B.A., Jumpponen, A. and Trappe, J.M. 2000. Utilization of major detrital substrates by dark-septate, root endophytes. Mycologia 92: 230-232.
Electronic Copy - 2000 Mycologia.pdf
Hector, A., Schmid, B., Beierkuhlein, C., Caldeira, M.C., Diemer, M., Dimitrakopoulos, P.G., Finn, J., Freitas, H., Giller, P.S., Good, J., Harris, R., Högberg, P., Huss-Danell, K., Joshi, J., Jumpponen, A., Körner, C., Leadley, P.W., Loreau, M., Minns, A., Mulder, C.P.H., O’Donovan, G.O., Otway, S.J., Pereira, J.S., Prinz, A., Read, D.J., Scherer-Lorenzen, M., Schulze, E.-D., Siamantziouras, A.-S.D. Spehn, E., Terry, A.C., Troumbis, A.Y., Woodward, F.I., Yachi, S. & Lawton, J.H. 2000. No consistent effect of plant diversity on productivity – response. Science 289: 1255a.
1999
Hector, A., Schmid, B., Beierkuhlein, C. Caldeira, M.C., Diemer, M., Dimitrakopoulos, P.G., Finn, J., Freitas, H., Giller, P.S., Good, J., Harris, R., Högberg, P., Huss-Danell, K., Joshi, J., Jumpponen, A., Körner, C., Leadley, P.W., Loreau, M., Minns, A., Mulder, C.P.H., O’Donovan, G.O., Otway, S.J., Pereira, J.S., Prinz, A., Read, D.J., Scherer-Lorenzen, M., Schulze, E.-D., Siamantziouras, A.-S.D. Spehn, E., Terry, A.C., Troumbis, A.Y., Woodward, F.I., Yachi, S. & Lawton, J.H. 1999. Plant Diversity and Productivity Experiments in European Grasslands. Science 286: 1123-1127.
Electronic Copy - 1999 Science.pdf
Jumpponen, A. 1999. Spatial distribution of discrete phenotypes of Phialocephala fortinii on a glacier forefront as inferred from RAPD markers. New Phytologist 141: 333-344.
Electronic Copy - 1999 New Phytologist.pdf
Jumpponen, A., Väre, H., Mattson, K.G., Ohtonen, R., and Trappe, J.M. 1999. Characterization of the safe sites for pioneers in primary succession on recently deglaciated glacier forefront. Journal of Ecology 87: 98-105.
Electronic Copy - 1999 JEcol.pdf
Jumpponen, A., Trappe, J.M. and Cázares, E. 1999. Ectomycorrhizal fungi in Lyman Lake Basin: a comparison between primary and secondary successional sites. Mycologia 91: 575–582.
Electronic Copy - 1999 Mycologia.pdf
Ohtonen, R., Fritze, H., Pennanen, T., Jumpponen, A., and Trappe, J.M. 1999. Ecosystem properties and microbial community changes in primary succession on a glacier forefront. Oecologia 119: 239-246.
Electronic Copy - 1999 Oecologia.pdf
1998
Jumpponen, A., Mattson, K.G., and Trappe, J.M. 1998. Mycorrhizal functioning of Phialocephala fortinii: interactions with soil nitrogen and organic matter. Mycorrhiza 7: 261-265.
Electronic Copy - 1998 Mycorrhiza.pdf
Jumpponen, A., Mattson, K., Trappe, J.M. and Ohtonen, R. 1998. Effects of established willows on primary succession on Lyman Glacier Forefront: evidence for simultaneous canopy inhibition and soil facilitation. Arctic and Alpine Research 30: 31-39.
Electronic Copy - 1998 AAAS.pdf
Jumpponen, A. and Trappe, J.M. 1998 Performance of Pinus contorta inoculated with two strains of root endophytic fungus Phialocephala fortinii: effects of resynthesis system and glucose concentration. Canadian Journal of Botany 76: 1205-1213.
Jumpponen, A. and Trappe, J.M. 1998. Dark-septate root endophytes: a review with special reference to facultative biotrophic symbiosis. New Phytologist 140: 295-310.
Electronic Copy - 1998 New Phytologist.pdf
1997
Jumpponen, A., N.S. Weber, J.M. Trappe and E. Cázares. 1997. Distribution and ecology of an ascomycete, Sarcoleotia globosa (Sommerf.:Fr.) Korf, in North America. Canadian Journal of Botany 75: 2228-2231.
1996
Trappe, J. M., Jumpponen, A., and Cázares, E. 1996. NATS truffle and truffle like fungi 5: Tuber lyonii (=T. texense), with a key to the spiny spored Tuber species groups. Mycotaxon 60: 365-372.