Jianhan Chen Research Group

Chen Research Group
Computational Biochemistry & Biophysics

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How to Succeed in Graduate School (want even more tips?)

How to be a Winner (by Andre DeHon, a computer scientist)
Graduate students do not have to be amateur researchers.
How to Succeed in Graduate School: A Guide for Students and Advisors (PDF)
The 5 'Virtues' of Successful Graduate Students (Thomas H. Benton, Chronicle of Higher Education)
How to Be a Good Graduate Student (Marie desJardins, Indiana University)

Computational Resources

Beocat Linux Cluster (our main HPC resource) (an "artistic" rendering)
Workstations in the lab: eight Linux boxes and two iMac (44 cores, 46 GB RAM, >30 TB raw disk space).

Molecular Modeling Basics

Introduction to Macromolecular Simulation (Peter J. Steinbach, NIH)
Moledular Dynamics from Wikipedia
Introduction to Molecular Modeling (MacCammon Lab, UCSD)
Molecular Dynamics Simulations (using) CHARMM (Stote Lab, Université Louis Pasteur)
A Molecular Dynamics Primer (Furio Ercolessi, University of Udine, Italy)

A list of essential reading materials for serious professionals.

Molecular Dynamics Tools

Modeling Workshops with Tutorials

CTBP Summer Workshop '04 (broad coverage of theory and computation in biophysics)
MMTSB/CTBP Workshop '06 (mainly on CHARMM/MMTSB Tool Set)
CHARMM Tutorial (Ahlam's favorite!)

Molecular Visualization

Online Lectures

Photos

Miscellaneous links

| 34 Chalmers Hall | Biochemistry & Molecular Biophysics | Kansas State University